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Promoting Interoperability Audit Guidelines

Indiana understands the importance of the requirement to monitor, measure, verify, validate, and report activities related to prepayment validation and postpayment audits of providers participating in the Medicaid Promoting Interoperability (PI) Program (formerly the Electronic Health Records Incentive Program).

To ensure program integrity, Indiana Family and Social Services Administration (FSSA) Audit Services, the Indiana Health Coverage Programs (IHCP) finance team, and contractors employ various methods, standards, processes, and procedures to perform the required audit tasks to bring the Indiana Medicaid PI Program into full compliance with Centers for Medicare & Medicaid Services (CMS) regulations.

Providers must submit auditable data and documentation for the PI Program registration and attestation process, and on request for validation and audit procedures. Providers are required to retain all documentation supporting attestation for a minimum of six years after each payment year.

Indiana FSSA Audit Services, the IHCP team, and contracted vendors are committed to implementing program integrity and fraud and abuse detection audit policies, processes, and procedures, when appropriate.

Please note that CMS will no longer conduct meaningful use audits for eligible hospitals (EHs) beyond program year 2014; therefore, beginning in program year 2015, Indiana will conduct those audits.

Prepayment Validation

When the Medical Assistance Provider Incentive Repository (MAPIR), Indiana's attestation system, receives a transaction from the Medicare & Medicaid Promoting Interoperability Program Registration & Attestation System (R&A), indicating that a provider has registered for the Indiana Medicaid PI Program, a transaction is stored in the database. All the information submitted by the provider is analyzed to ensure consistency with IHCP data and PI Program requirements.

Postpayment Audits

The postpayment review procedures are designed to help identify recoupment indicators and other potential incorrect payments. Eligible professionals (EPs) that received a Medicaid incentive payment are subject to a postpayment review in the form of a desk review or an on-site review. Providers are selected for audits based on proven Medicaid stratification variables, and risk assessment criteria is used before postpayment audits are performed.

Typically, postpayment audits begin with desk reviews followed by field audits if a desk review does not conclude audit determinations.

Appeals Process Overview 

The FSSA has a process in place for eligible providers to appeal provider eligibility determinations and Health Information Technology (HIT) PI Incentive Payments. The appeals process addresses provider appeals of payments, provider eligibility determinations, and demonstrations of efforts to adopt, implement, upgrade, or meaningfully use certified EHR technology (CEHRT).

If a provider disagrees with the final calculation of overpayment and wishes to appeal the FSSA's determination, the provider can file an appeal per the steps listed in the Final Calculation of Overpayment letter that the FSSA issues to the provider.


If it is determined that monies have been paid inappropriately, a recoupment process is leveraged to recover the funds. An accounts receivable (A/R) record is created associated with the appropriate provider and the payment identified as an overpayment. Payment amounts are collected and refunded to the CMS via the appropriate adjustment. Indiana law requires that a provider repay the amount of the overpayment within 300 days of receiving the Final Calculation of Overpayment letter, regardless of whether the provider is eligible or chooses to appeal the determination.

For additional information regarding PI Program Audits, please visit the FAQs - Indiana Medicaid Promoting Interoperability Program page.

For guidance and technical assistance with completing a Medicaid PI Program audit documentation request, contact Purdue Healthcare Advisors at 1-844-PHA-INMU (1-844-742-4668) or Note: This guidance is to support the data submission, but it remains the responsibility of the provider to submit the information directly to the auditor.

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